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Resolution:

  1. Create a new filter. For it's its query you can use something like 'project = XXXX', where XXXX is any project of your choosing.
  2. In the JIRA's database in the AO_60DB71_RAPIDVIEW table update the SAVED_FILTER_ID of the problematic boards to use the newly created filter's ID. To find the problematic boards you can use their ID's from the URL in the links represented by the boards' names in the integrity check result.
  3. Refresh JIRA’s internal caches for this change to be picked up – you can do that by going to CMJ’s Advanced page and clicking the Clear caches button.